Sym_mouse 0: Chr_mouse Alias Search_sym Sort_by_mouse_sym Map_ccr Map_mit Chr_band Locus_name Map_method Sym_human Chr_human Chr_hs_guess Comment Reference Anchor_comp Chr_cat Chr_cow Chr_deermus Chr_dog Chr_fox Chr_hamster Chr_horse Chr_mink Chr_mouse_predicted Chr_pig Chr_rabbit Chr_rat Chr_sheep Comp_note Cosmid_hsa Cosmid_mmu Enzyme Genbank Gene_note Is_129 Is_a Is_akr Is_balbc Is_c3h Is_c57bl6 Is_dba2 Is_sjl Locus_type Map_gbase Map_cm_hsa Map_mb_has Flpter_hsa Map_note Map_panel Mit_a Mit_akr Mit_assay Mit_c57bl6 Mit_balbc Mit_c3h Mit_cast Mit_dba2 Mit_ob Mit_lp Mit_nod Mit_non Mit_spr Neighbor_cen Neighbor_tel Panel_name Phenotype Primer Repeat_info Ri_axb_bxa Ri_akxd Ri_akxl Ri_bxd Ri_bxh Ri_bxj Ri_cxb Ri_cxj Ri_cxs Ri_lxp Ri_nx8 Ri_nx9 Ri_nxsm Ri_oxa Ri_swxj Ri_swxl Yac_hsa Yac_mmu Year Sort_by_group Sort_by_human_chr Sort_by_human_sym Status 3/31/93 1/24/98 Jax_number Accession_mdb A000001 Amely Y Amg amel, amg, amelx, amely Amel amelogenin Hom AMELY Yq11.2 Enamel-specific protein. Located very close to the distal end of Chr X, near the pseudoautosomal border. In human and cow also present on Chr Y. There may be a homolog on the mouse Chr Y. Check with Colin Bishop. Snead M 1985 Biochem Biophys Res Comm 129:812-0818 Y Y M10095 amelogenin mRNA, partial cds. *Title* DNA sequence for cloned cDNA for murine amelogenin reveal the amino acid sequence for enamel-specific protein D enzyme (unclassified) 1985 nomenclature 8/10/94 1/24/98 R111767 B3 Y 'b3' B003 contig B3 in Sxr region Mitchell M 1992 Genomics 12:26 D syn 1992 provisional, check with Mike or Colin 8/10/94 1/24/98 R109295 Bkm1 Y Bkm-1 bkm1 Bkm001 S banded krait minor satellite DNA 1 Locus with the same name is assigned by to Chr 17 by 1993 Committee. However, this Chr 17 locus is referred to by GBASE as Bkm4. 19204 18231 0 1995-1997 nomenclature 8/10/94 1/24/98 R109296 Dy2 Y dy2, -4dy-5 Dy002 not known Hom DY Yq11 Listed by S.J. O-5Brien 1993 Committee Report as a Chr Y locus in human, cow, and pig. Posible mouse homolog on mouse Y Chr. Check with Colin. Symbol given provisionally by RW. Note, mouse dystrophia muscularis, dy, conflicts with this mammalia Yp21 Yp 1994 RW personal 8/10/94 1/24/98 R111768 DYBir1 Y dybir1 D21Bir0001 S DNA segment, Chr Y, Birkenmeier 1 L Rowe LB 1994 Mammalian Genome 5:253 18140 D P 2 DNA (random amplified polymorphic DNA segment) 1993 Bir 8/10/94 1/24/98 R109297 DYBir2 Y dybir2 D21Bir0002 S DNA segment, Chr Y, Birkenmeier 2 L Rowe LB 1994 Mammalian Genome 5:253 18140 D P 2 DNA (random amplified polymorphic DNA segment) 1993 Bir 8/10/94 1/24/98 R109298 DYBir3 Y dybir3 D21Bir0003 S DNA segment, Chr Y, Birkenmeier 3 L Rowe LB 1994 Mammalian Genome 5:253 18140 D P 2 DNA (random amplified polymorphic DNA segment) 1993 Bir 8/10/94 1/24/98 R109299 DYBir4 Y dybir4 D21Bir0004 S DNA segment, Chr Y, Birkenmeier 4 L Rowe LB 1994 Mammalian Genome 5:253 18140 D P 2 DNA (random amplified polymorphic DNA segment) 1993 Bir 8/10/94 1/24/98 R109300 DYBir5 Y dybir5 D21Bir0005 S DNA segment, Chr Y, Birkenmeier 5 L Rowe LB 1994 Mammalian Genome 5:253 18140 D P 2 DNA (random amplified polymorphic DNA segment) 1993 Bir 8/10/94 1/24/98 R109301 DYByu1 Y D0Byu1 dybyu1, d0byu1 D21Byu0001 DNA segment, Chr Y, Brigham Young University 1 R see probe column. Woodward SR 1992 Mammalian Genome 3:73 1579 3885 D P syn DNA (random amplified polymorphic DNA segment) Random amplified polymorphic DNA sequence (RAPD) using the primer CCGAATTCCC. This BYU series can be used to quickly define murine subspecies Y Chr types B B B B B B B B B B B B B B B B B B B B B B B B B B 1992 Byu 8/10/94 1/24/98 R109302 DYByu2 Y dybyu2 D21Byu0002 DNA segment, Chr Y, Brigham Young University 2 see probe column. Wardell BB 1993 Mammalian Genome 4:109 1579 3885 D P syn DNA (random amplified polymorphic DNA segment) Random amplified polymorphic DNA sequence (RAPD) using the primer ACTGGGACTC. DYByu2, 5, 6 and 8 identify M.m.musculus and M.m. domesticu type Y Chr 1993 Byu 8/10/94 1/24/98 R109303 DYByu3 Y dybyu3 D21Byu0003 DNA segment, Chr Y, Brigham Young University 3 see probe column. Wardell BB 1993 Mammalian Genome 4:109 1579 3885 D P syn DNA (random amplified polymorphic DNA segment) Random amplified polymorphic DNA sequence (RAPD) using the primer CACCTTTCCC. DYByu1, 3, 4, and 7 identify M.m. musculus 1993 Byu 8/10/94 1/24/98 R109304 DYByu4 Y dybyu4 D21Byu0004 DNA segment, Chr Y, Brigham Young University 4 see probe column. Wardell BB 1993 Mammalian Genome 4:109 1579 3885 D P syn DNA (random amplified polymorphic DNA segment) Random amplified polymorphic DNA sequence (RAPD) using the primerGGTCGATCTG 1993 Byu 8/10/94 1/24/98 R109305 DYByu5 Y dybyu5 D21Byu0005 DNA segment, Chr Y, Brigham Young University 5 see probe column. Wardell BB 1993 Mammalian Genome 4:109 1579 3885 D P syn DNA (random amplified polymorphic DNA segment) Random amplified polymorphic DNA sequence (RAPD) using the primer GTGACATGCC 1993 Byu 8/10/94 1/24/98 R109306 DYByu6 Y dybyu6 D21Byu0006 DNA segment, Chr Y, Brigham Young University 6 see probe column. Wardell BB 1993 Mammalian Genome 4:109 1579 3885 D P syn DNA (random amplified polymorphic DNA segment) Random amplified polymorphic DNA sequence (RAPD) using the primer GGCACTGAGG 1993 Byu 8/10/94 1/24/98 R109307 DYByu7 Y dybyu7 D21Byu0007 DNA segment, Chr Y, Brigham Young University 7 see probe column. Wardell BB 1993 Mammalian Genome 4:109 1579 3885 D P syn DNA (random amplified polymorphic DNA segment) Random amplified polymorphic DNA sequence (RAPD) using the primer GGGACGTTGG 1993 Byu 8/10/94 1/24/98 R109308 DYByu8 Y dybyu8 D21Byu0008 DNA segment, Chr Y, Brigham Young University 8 see probe column. Wardell BB 1993 Mammalian Genome 4:109 1579 3885 D P syn DNA (random amplified polymorphic DNA segment) Random amplified polymorphic DNA sequence (RAPD) using the primer GGGCCAATGT 1993 Byu 8/10/94 1/24/98 R109309 DYByu9 Y dybyu9 D21Byu0009 DNA segment, Chr Y, Brigham Young University 9 see probe column. Wardell BB 1993 Mammalian Genome 4:109 1579 3885 D P syn DNA (random amplified polymorphic DNA segment) Random amplified polymorphic DNA sequence (RAPD) using the primer GGACAACGAG. This RAPD identifies M.m. domesticus and M.m. bactrianus type Y Chr. Maps to the non-pseudo autosomal part of the Y Chr. 1993 Byu 8/10/94 1/24/98 R109310 Hya Y H-Y hya, 'hy' Hya 2 histocompatibility Y D R HYA Yq11 or Yp11.2-qter Deletion interval 2; Y B 0 immune (cell surface antigen) C C J J C C C C U C 1995-1997 8/10/94 1/24/98 R109311 Hyab Y hyab Hyab 2 histocompatibility Y antigen A restricted 21470 1994 reserved 8/10/94 1/24/98 R111821 Hydk Y hydk Hydk 2 histocompatibility Y antigen D restricted 21470 1994 reserved 8/10/94 1/24/98 R111823 Hykk1 Y hykk1 Hykk001 2 histocompatibility Y antigen K restricted 1 21470 1994 reserved 8/10/94 1/24/98 R111824 Hykk2 Y hykk2 Hykk2 histocompatibility Y antigen K restricted 2 21470 1994 reserved 8/10/94 1/24/98 R111825 Mov24 Y Mov-24 mov24 Mov024 S Moloney leukemia virus 24 Located proximal to Sts locus. 8561 15 immune (virus or disease or tumor resistance) 1995-1997 8/10/94 1/24/98 R109313 Mtv31 Y Mtv-31 mtv31 Mtv031 S mammary tumor virus 31 11120 21512 syn immune (virus or disease or tumor resistance) 1995-1997 8/10/94 1/24/98 R109314 Mtv42 Y Mtv-42 mtv42 Mtv042 S mammary tumor virus 42 4958 8083 8666 10908 11092 syn immune (virus or disease or tumor resistance) 1995-1997 8/10/94 1/24/98 R109315 Murvy Y murvy Murvy S murine repeated virus, Y linked 9834 9926 22 1995-1997 provisional 8/10/94 1/24/98 R109316 Pmv34 Y Pmv-34 pmv34 Pmv034 S polytropic murine virus leukemia 34 R 1224 3226 3551 9925 syn immune (virus or disease or tumor resistance) D D D D D D D D D D D D A A D A A A A A A A A A A L A L A L A A A L L L L L L L L A A 1995-1997 8/10/94 1/24/98 R109317 Sdma Y sdma Sdma 2 Y-linked serologically defined male antigen D SDMA? Yq? Deletion interval 2;; Sxr/Yp map position. Bishop C 1993 Mamm Genome 4:S282 23699 20632 5223 B syn 1993 8/10/94 1/24/98 R109318 Smcy Y smcy Smcy 2 selected mouse cDNA on the Y *SMCY* Y non standard symbol. Agulnik 1994 Hum Mol Genet 3:879 18900 18901 Maps between Zfy2 and Ube1y1. 1994 10/15/94 1/24/98 R114308 Smy Y smy Smy spermiogenesis gene Conway 1994 Mamm Genome 5:203 17614 3019 7835 17614 1994 8/10/94 1/24/98 R113737 Spy Y spy Spy 2 spermatogenesis Y D SPY Y Mitchell M 1992 Genomics 12:26 8423 9435 23697 B 0 1992 8/10/94 1/24/98 R109319 Sry Y MUSSRYLOC sry Sry Y-linked sex determining region SRY Yp11.2-pter Product of this gene largely responsible for triggering the development of male phenotype. The mutant Sxr allele is associated with gonadal dysgenesis in human. Gubbay J 1992 PNAS 89:7953 Y Y Y Yp12 X67204 Sry DNA *Title* Nucleotide sequence of mouse Sry gene is different between Y chromosomes originateng form Mus musculus musculus and Mus cusculus domesticus 0 human (disease model) 1992 8/10/94 1/24/98 R109320 Ssty Y pYMT2/B ssty, pymt2b Ssty Y-linked spermiogenesis specific transcript D Deletion interval 4-6, maps to Yq. 7835 17614 D syn 1995-1997 8/10/94 1/24/98 R109321 Sts-ps Y Sts-p stsps Stsps steroid sulfatase pseudogene STSP Yq11 syn <1994 8/10/94 1/24/98 R109323 Sx1 Y Sxr sx1, sxr Sx001 Sx1 locus Contig in Sxr region. Note that Sxr symbol was withdrawn. Sxr found to be a chromosomal aberration, Tp(Y)1Ct. Also see T5 locus. Mitchell M 1992 Genomics 12:26 D syn 1992 8/10/94 1/24/98 R109324 T5 Y Sxr 't5', sxr T005 T5 locus Contig in Sxr region. Note that Sxr symbol was withdrawn. Sxr found to be a chromosomal aberration, Tp(Y)1Ct. Also see Sx1. Mitchell M 1992 Genomics 12:26 syn 1992 8/10/94 1/24/98 R109325 Tdy Y Tdf, Zfy-1, Zfy-2 tdy, tdf, zfy1, zfy2 Tdy 3 Y-linked sex determining (Sry) transcription factor D TDF Yp11.3 Testis determining, Chr Y, is a mutant allele of Sry transcription factor. . Gubbay J 1990 Nautre 346:245 15310 10734 9332 9331 B 0 reproduction (sex organs) 1990 8/10/94 1/24/98 R109326 TelYp Y telyp Tel21p 1 telomeric segment, Chr Y, p arm 560 0 1995-1997 8/10/94 1/24/98 R109330 TelYq Y telyq Tel21q telomeric segment, Chr Y, q arm syn <1994 8/10/94 1/24/98 R109331 Ube1y1 Y Ube1y-1, Ube-2, Sby, A1s9Y-1 ube1y1, ube2, a1s9y1, sby Ube001y001 2 ubiquitin activating enzyme E1, Chr Y Also known as Sxrb Y-homolog. Imai N 1992 Gene 118:276 896 2650 615 D10576 D 0 1992 8/10/94 1/24/98 R109332 Ube1y1-ps1 Y Ube-3, A1s9Y-2, Ube1y-2 ube1y1ps1, ube3, a1s9y2, ube1y2 Ube001y001ps001 ubiquitin activating enzyme E1, Chr Y, pseudogene-1 615 0 1995-1997 8/10/94 1/24/98 R109333 Xlrl Y xlrl Xlrl X-linked B cell surface antigen, related sequence Garchon 1989 NAR 17:9871 D syn 1989 8/10/94 1/24/98 R109334 XmmvY Y Xmmv-Y, Env-Y xmmvy, envy XmmvY S xenotropic-mink cell focus forming leukemia virus, Chr Y 7198 18 immune (virus or disease or tumor resistance) 1995-1997 8/10/94 1/24/98 R109335 Xmv11 Y Xmv-11 xmv11 Xmv011 S xenotropic murine leukemia virus 11 Frankel WN 1989 J Virol 63:1763 560 2290 9678 D syn immune (virus or disease or tumor resistance) 1989 8/10/94 1/24/98 R109337 Xmv40 Y Xmv-4 xmv40 Xmv040 S xenotropic murine leukemia virus 40 560 2290 9678 syn immune (virus or disease or tumor resistance) 1995-1997 8/10/94 1/24/98 R109338 Xmv7 Y Xmv-7 xmv7 Xmv007 S xenotropic murine leukemia virus 7 Frankel WN 1989 J Virol 63:1763 560 2290 9678 D syn immune (virus or disease or tumor resistance) 1989 8/10/94 1/24/98 R109336 Yaa Y yaa Yaa S Y linked autoimmune acceleration 6235 6372 7172 7276 7302 20 1995-1997 8/10/94 1/24/98 R109339 YB10 Y yb10 YB010 S Y chromosome specific B10 derived sequences Not paired. Located near Murvy locus. 9833 9834 23 1995-1997 8/10/94 1/24/98 R109340 Ylr Y ylr Ylr S unknown name 9833 9834 syn 1995-1997 8/10/94 1/24/98 R109341 Zf2 Y Sxr zf2, sxr Zf002 contig Zf2 in Sxr region Note that Sxr symbol was withdrawn. Sxr found to be a chromosomal aberration, Tp(Y)1Ct. Also see T5 locus and Sx1. Mitchell M 1992 Genomics 12:26 D 1992 8/10/94 1/24/98 R109342 Zfy1 Y Zfy-1 zfy1 Zfy001 2 Y linked zinc finger protein 1 D I P ZFY Yp11.3 Deletion interval 3/2 or 1/2 junction. Ashworth A 1989 Nucleic Acids Res 17:2864 8950 11581 18248 Y Yq12.2 Y Y X14382 B D 0 1989 8/10/94 1/24/98 R109343 Zfy2 Y Zfy-2 zfy2 Zfy002 2 Y linked zinc finger protein 2 D I P ZFY Yp11.2-pter Deletion interval 1/2 or 3/2 junction. 8950 11581 18248 Y Yq12.2 Y Y B D 0 1995-1997 8/10/94 1/24/98 R109344 Zfy2/1 Y Zfy-2/1 zfy21 Zfy002/001 Y linked zinc finger protein 2/1 syn <1994 8/10/94 1/24/98 R109345 SOURCES: Sym_mouse: data taken primarily from Mouse Genome 91:156-299. Updated using GBASE Locus List November 1993. Updated Jan 98 from 1998 Chr Comm Reports. Chr_mouse Alias: Several sources, most prominently GBASE, Nov 1993 listing. Search_sym: Portable Dictionary of the Mouse Genome. Sort_by_mouse_sym: RW Map_ccr: Mostly data taken directly from the Mouse Chromosome Committee Reports (1998). Map_mit: Release 15 data. cM distances of MIT loci relative to most proximal MIT locus. Some negative values. Whitehead Institute/MIT Center for Genome Research, Genetic Map of the Mouse, Database Release 15 of Oct 1997. Chr_band: In mouse Locus_name: Locus names from various sources, most prominently, GBASE. Use of hypens in names has been minimized to simplify searching. Hypens are retained in biochemical names. Method: data from Genetic Maps: Locus Maps of Complex Genomes 6th ed 1993. SJ O'Brien ed pp. 4.53 to 4.109. Sym_human: from Genetic Maps 6th ed Book 5 Chr_human: Chromosomal position of human homolog of mouse locus. From GDB or primary literature. Chr_hs_guess: Position of homologous human gene or position of nearby loci that do have human homologs. Comment: Paraphrased information from many sources. Reference: from various sources, most prominently, the Chromosome Committee Reports Anchor_comp: O�Brien et al., 1994, Report of the Committee on Comparative Gene Mapping HGM 93 Chr_cat: from S.J. O'Brien, Genetic Maps 6th ed 1993 Chr_cow: Womack JE (1993) Genetic Maps 6th ed, book 4, p 4.264-4.275. O�Brien et al., 1994, Report of the COmmittee on Comparative Gene Mapping HGM 93 Chr_deermus: deermouse data from O�Brien et al., 1994, Report of the Committee on Comparative Gene Mapping HGM 93 Chr_dog: O�Brien et al., 1994, Report of the COmmittee on Comparative Gene Mapping HGM 93 Chr_fox: O�Brien et al., 1994, Report of the Committee on Comparative Gene Mapping HGM 93 Chr_hamster: O�Brien et al., 1994, Report of the Committee on Comparative Gene Mapping HGM 93 Chr_horse: O�Brien et al., 1994, Report of the Committee on Comparative Gene Mapping HGM 93 Chr_mink: O�Brien et al., 1994, Report of the Committee on Comparative Gene Mapping HGM 93 Chr_mouse_predicted: Chr_pig: O�Brien et al., 1994, Report of the Committee on Comparative Gene Mapping HGM 93 Chr_rabbit: O�Brien et al., 1994, Report of the Committee on Comparative Gene Mapping HGM 93 Chr_rat: Levan G 1993 Genetic Maps 6th ed. Book 4, p. 4.193-4.206. Data are current to July 1992. Chr_sheep: O�Brien et al., 1994, Report of the Committee on Comparative Gene Mapping HGM 93 Comp_note: Cosmid_hsa: Cosmid_mmu: Enzyme: Various sources Genbank: Gifford Keen, Los Alamos National Laboratory provide a listing of data on all mouse sequence files in GenBank up to Aug 1993. This file is available from RW on request. Gene_note: usually from GenBank Is_129: Genetic Variants and Strains of the Laboratory Mouse, 2nd ed Chpt 17 by Roderick & Guidi. Carret^ indicates within-strain variability. Asterisk is a blank "placeholder". Is_a: Genetic Variants and Strains of the Laboratory Mouse, 2nd ed Chpt 17 by Roderick & Guidi. Carret^ indicates within-strain variability. Asterisk is a blank "placeholder". Is_akr: Genetic Variants and Strains of the Laboratory Mouse, 2nd ed Chpt 17 by Roderick & Guidi. Carret^ indicates within-strain variability. Asterisk is a blank "placeholder". Is_balbc: Genetic Variants and Strains of the Laboratory Mouse, 2nd ed Chpt 17 by Roderick & Guidi. Carret^ indicates within-strain variability. Asterisk is a blank "placeholder". Is_c3h: Genetic Variants and Strains of the Laboratory Mouse, 2nd ed Chpt 17 by Roderick & Guidi. Carret^ indicates within-strain variability. Asterisk is a blank "placeholder". Is_c57bl6: Genetic Variants and Strains of the Laboratory Mouse, 2nd ed Chpt 17 by Roderick & Guidi. Carret^ indicates within-strain variability. Asterisk is a blank "placeholder". Is_dba2: Genetic Variants and Strains of the Laboratory Mouse, 2nd ed Chpt 17 by Roderick & Guidi. Carret^ indicates within-strain variability. Asterisk is a blank "placeholder". Is_sjl: Genetic Variants and Strains of the Laboratory Mouse, 2nd ed Chpt 17 by Roderick & Guidi. Carret^ indicates within-strain variability. Asterisk is a blank "placeholder". Type: data from Genetic Maps: Locus Maps of Complex Genomes 6th ed 1993. SJ O'Brien ed pp. 4.53 to 4.109. Map_gbase Map_cm_hsa: Map_mb_hsa: Flpter_hsa: Map_note: from primary literature. Mit_panel: Dietrich et al April 1994 release Mit_a: Dietrich et al April 1994 release Mit_akr: Dietrich et al April 1994 release Mit_assay: Dietrich et al April 1994 release Mit_c57bl6: Dietrich et al April 1994 release Mit_balbc: Dietrich et al April 1994 release Mit_c3h: Dietrich et al April 1994 release Mit_cast: Dietrich et al April 1994 release Mit_dba2: Dietrich et al April 1994 release Mit_ob: Dietrich et al April 1994 release Mit_lp: Dietrich et al April 1994 release Mit_nod: Dietrich et al April 1994 release Mit_non: Dietrich et al April 1994 release Mit_spr: Dietrich et al April 1994 release Neighbor_cen: primary literature Neighbor_tel: Primary literature Panel_name: various sources Phenotype: data from MC Green 1989 and Peters Primer: Some data from Janan Eppig's database as published in Mammalian Genome 1992 3:300-430 or Mouse Genome 1992 90:599. MIT PCR primer sequences from the Oct 1993 release. Repeat_info: From MIT Database release 7 of July 20, 1994. RI data from Dr. R. Elliott, Roswell Park Cancer Institute. RI data from Dr. R. Elliott, Roswell Park Cancer Institute. Data release of March 94 with Map Manager program 2.5 from Dr. Kenneth Manly. RI data from Dr. R. Elliott, Roswell Park Cancer Institute. RI data from Dr. R. Elliott, Roswell Park Cancer Institute. RI data from Dr. R. Elliott, Roswell Park Cancer Institute. RI data from Dr. R. Elliott, Roswell Park Cancer Institute. RI data from Dr. R. Elliott, Roswell Park Cancer Institute. RI data from Dr. R. Elliott, Roswell Park Cancer Institute. RI data from Dr. R. Elliott, Roswell Park Cancer Institute. RI data from Dr. R. Elliott, Roswell Park Cancer Institute. RI data from Dr. R. Elliott, Roswell Park Cancer Institute. RI data from Dr. R. Elliott, Roswell Park Cancer Institute. RI data from Dr. R. Elliott, Roswell Park Cancer Institute. RI data from Dr. R. Elliott, Roswell Park Cancer Institute. RI data from Dr. R. Elliott, Roswell Park Cancer Institute. RI data from Dr. R. Elliott, Roswell Park Cancer Institute. Yac_mus: Primary literature Year: From various sources Sort_by_group: RW Sort_by_human_chr: RW Sort_by_human_sym: RW Status: Data primarily from GBASE July 1993 and Genetic Maps 6th ed 1993. 3/31/93 1/24/98 Jax_number: Jackson Laboratory reference number for a mutant mouse stock Accession_mgd A000003